Server Benchmark Results (2015) Individual protein domains

Jobs were run at E-value 10-4 with 5 jackhmmer iterations. Alignment rows were filtered if gap content exceeded 30%, alignment columns were not used in EC calculation if gap content exceeded 30%.

Uniprot AC Uniprot ID PDB ID PFAM ID Start
- End
Meff Meff / Len. Len. of cov. reg. Pct. of cov. reg. used # of ECs used to fold PPV in # of ECs used to fold TM score (best in top 10 rank) Download link
P32173 MOBA_ECOLI 1e5k PF12804 1 - 194 35397.8 182.5 184 97.8 150 0.52 0.55 download
P00807 BLAC_STAAU 1alq PF00144 24 - 244 29166.2 132.0 198 93.9 170 0.48 0.49 download
P00974 BPT1_BOVIN 1aal PF00014 36 - 93 5306.6 91.5 54 100.0 60 0.68 0.59 download
P09030 EX3_ECOLI 1ako PF03372 1 - 268 20426.9 76.2 265 84.9 260 0.58 0.57 download
Q9WZB9 Q9WZB9_THEMA 1nf2 PF08282 1 - 268 15691.0 58.6 255 98.8 220 0.73 0.54 download
P55263 ADK_HUMAN 1bx4 PF00294 22 - 362 19478.5 57.1 286 90.2 360 0.49 0.59 download
Q27450 CYP1_BRUMA 1a33 PF00160 1 - 177 9640.8 54.5 161 90.1 130 0.74 0.69 download
Q27084 TAL2_TACTR 1tl2 PF14517 20 - 255 11087.1 47.0 176 92.6 260 0.36 0.35 download
P0AA04 PTHP_ECOLI 1cm2 PF00381 1 - 85 3883.1 45.7 81 100.0 40 0.95 0.72 download
P45202 YBAK_HAEIN 1dbu PF04073 1 - 158 6834.8 43.3 139 95.7 140 0.69 0.68 download
P0AAI9 FABD_ECOLI 1mla PF00698 1 - 309 13070.6 42.3 290 97.2 300 0.72 0.82 download
P00268 RUBR_CLOPA 1b13 PF00301 1 - 54 2113.2 39.1 50 100.0 30 0.73 0.33 download
P50600 TOLA_PSEAE 1lr0 PF13103 226 - 347 4653.4 38.1 97 94.8 80 0.55 0.44 download
P63279 UBC9_HUMAN 1a3s PF00179 1 - 158 5501.0 34.8 145 95.2 70 0.77 0.57 download
P0A6K3 DEF_ECOLI 1bs4 PF01327 2 - 169 5092.7 30.3 152 100.0 140 0.85 0.64 download
P05766 RS15_GEOSE 1a32 PF00312 2 - 89 2518.8 28.6 85 100.0 30 0.47 0.57 download
P25814 RNPA_BACSU 1a6f PF00825 2 - 116 3033.5 26.4 104 99.0 70 0.77 0.73 download
O04147 CPD_ARATH 1fsi PF07823 1 - 181 4719.1 26.1 168 94.6 100 0.52 0.56 download
O58558 Y828_PYRHO 1v30 PF06094 1 - 116 2976.0 25.7 94 98.9 60 0.72 0.57 download
P48286 RL22_THETH 1bxe PF00237 1 - 113 2723.7 24.1 107 100.0 70 0.79 0.66 download
P22749 GNLY_HUMAN 1l9l PF03489 63 - 136 1782.1 24.1 70 100.0 20 0.4 0.42 download
Q8U3S5 Q8U3S5_PYRFU 1vk1 PF02195 1 - 242 5679.4 23.5 196 98.5 250 0.19 0.28 download
P0A744 MSRA_ECOLI 1ff3 PF01625 2 - 212 4701.9 22.3 160 97.5 200 0.67 0.69 download
P00431 CCPR_YEAST 1a2f PF00141 71 - 361 6127.1 21.1 251 98.4 90 0.71 0.62 download
P54464 YQEY_BACSU 1ng6 PF09424 1 - 148 3058 20.66 144 99.3 70 0.76 0.51 download
Q926X2 Q926X2_LISIN 2icg PF09346 1 - 159 3215.5 20.2 129 93.0 70 0.77 0.34 download
P61316 LOLA_ECOLI 1iwl PF03548 22 - 203 3535.1 19.4 164 99.4 80 0.74 0.41 download
O59300 RL13_PYRHO 1j3a PF00572 1 - 142 2734.8 19.3 115 99.1 110 0.5 0.5 download
P33176 KINH_HUMAN 1bg2 PF00225 1 - 325 5993.8 18.4 319 99.1 260 0.66 0.68 download
Q9Z9H5 RL17_THET8 1gd8 PF01196 1 - 118 2097.9 17.8 113 99.1 80 0.7 0.67 download
Q97S59 Q97S59_STRPN 1g2r PF04296 1 - 97 1694.1 17.5 83 100.0 60 0.75 0.64 download
P0AG82 PSTS_ECOLI 1a40 PF12849 26 - 346 5040.3 15.7 297 82.5 250 0.72 0.65 download
P04392 DMA_BPT4 1q0s PF02086 1 - 259 3778.7 14.6 242 95.5 140 0.61 0.38 download
P37167 ACTP_ACACA 1ahq PF00241 2 - 138 1988.3 14.5 128 97.7 50 0.8 0.59 download
P38516 RL4_THEMA 1dmg PF00573 2 - 226 3092.3 13.7 222 91.0 230 0.48 0.65 download
Q9X1H9 Y1468_THEMA 1mgp PF02645 1 - 288 3889.9 13.5 281 97.9 290 0.71 0.8 download
P76318 YEDK_ECOLI 2icu PF02586 1 - 222 2932.0 13.2 207 95.2 140 0.61 0.64 download
P13051 UNG_HUMAN 1akz PF03167 94 - 313 2892.3 13.2 216 99.5 110 0.71 0.66 download
Q8CZ42 Q8CZ42_STRR6 2fi0 PF08984 1 - 81 1050.5 13.0 65 92.3 50 0.42 0.57 download
P0A8A0 YEBC_ECOLI 1kon PF01709 1 - 246 2804.9 11.4 234 99.1 150 0.72 0.51 download
Q9K0A8 Q9K0A8_NEIMB 1rv9 PF02578 1 - 259 2908.4 11.2 230 100.0 200 0.76 0.72 download
O58764 Y1033_PYRHO 1wmm PF01878 1 - 145 1560.5 10.8 140 91.4 100 0.47 0.41 download
P00918 CAH2_HUMAN 12ca PF00194 1 - 260 2536.1 9.8 253 86.6 140 0.74 0.58 download
O27021 O27021_METTH 1ihn PF04430 1 - 111 1010.6 9.1 107 92.5 90 0.37 0.35 download
Q9Y3E5 PTH2_HUMAN 1q7s PF01981 63 - 179 1054.6 9.0 114 100.0 30 0.83 0.43 download
P18031 PTN1_HUMAN 1a5y PF00102 1 - 330 2974.7 9.0 268 96.6 280 0.66 0.67 download
P23540 RNMC_MOMCH 1bk7 PF00445 1 - 191 1699.6 8.9 171 94.7 40 0.6 0.29 download
Q8ZPK0 DMSD_SALTY 1s9u PF02613 1 - 204 1816.3 8.9 181 96.7 50 0.72 0.56 download
Q9KUP8 Y467_VIBCH 2aj2 PF02622 1 - 187 1625.7 8.7 179 96.1 50 0.66 0.45 download
Q03471 ARIS_PENRO 1dgp PF03936 40 - 339 2473.9 8.3 263 96.2 110 0.44 0.47 download
P13696 PEBP1_BOVIN 1a44 PF01161 2 - 186 1394.4 7.5 159 93.1 80 0.79 0.59 download
O29167 O29167_ARCFU 2isb PF05683 1 - 180 1315.3 7.3 174 97.7 90 0.69 0.57 download
Q0PBQ7 Q0PBQ7_CAMJE 1vqr PF08668 1 - 285 2040.7 7.2 226 95.1 210 0.37 0.35 download
P39683 NPT1_YEAST 1vlp PF04095 1 - 429 2672.4 6.2 407 86.7 250 0.44 0.37 download
Q16595 FRDA_HUMAN 1ekg PF01491 86 - 210 774.5 6.2 111 92.8 60 0.55 0.34 download
P26602 UBIC_ECOLI 1fw9 PF04345 2 - 165 1015.9 6.2 146 100.0 40 0.65 0.33 download
P00149 CYCP_RHOPA 1a7v PF01322 22 - 146 762.4 6.1 119 99.2 20 0.95 0.64 download
O70467 ANM3_RAT 1f3l PF06325 208 - 528 1851.8 5.8 282 98.2 130 0.78 0.37 download
Q9HU36 FETP_PSEAE 1t07 PF04362 1 - 90 492.3 5.5 88 100.0 30 0.5 0.34 download
O67648 LPXC_AQUAE 1p42 PF03331 2 - 271 1451.7 5.4 265 100.0 160 0.78 0.69 download
P25871 OLPA_TOBAC 1aun PF00314 22 - 229 1087.7 5.2 204 97.5 70 0.69 0.36 download
P00698 LYSC_CHICK 132l PF00062 19 - 147 674.7 5.2 127 96.1 70 0.54 0.44 download
P09598 PHLC_BACCE 1ah7 PF00882 39 - 283 1239.1 5.1 234 95.7 80 0.33 0.46 download
O86309 NAT_MYCSM 1gx3 PF00797 1 - 275 1384.8 5.0 254 97.6 110 0.77 0.55 download
Q9X0H1 ARCH_THEMA 1j5u PF01951 1 - 124 613.5 5.0 123 100.0 70 0.41 0.5 download
P01087 IAAT_ELECO 1b1u PF00234 1 - 122 565.5 4.6 103 100.0 20 0.15 0.23 download
P06762 HMOX1_RAT 1dve PF01126 1 - 267 1202.2 4.5 209 98.6 30 0.8 0.38 download
P01484 SCX2_ANDAU 1aho PF00537 20 - 83 250.5 3.9 62 91.9 40 0.55 0.33 download
P80302 ANTA_HIRME 1bx7 PF02822 1 - 55 210.4 3.8 44 97.7 50 0.24 0.21 download
P15879 ARC3_CBDP 1g24 PF03496 41 - 251 797.8 3.8 182 84.1 40 0.5 0.3 download
P17900 SAP3_HUMAN 1g13 PF02221 32 - 193 610.3 3.8 153 77.8 80 0.33 0.25 download
A3D5G6 A3D5G6_SHEB5 2ra9 PF06938 9 - 157 556.6 3.7 139 99.3 50 0.46 0.41 download
Q81BF7 Q81BF7_BACCR 2qgm PF05139 10 - 148 504.5 3.6 110 96.4 20 0.5 0.31 download
Q81BF7 Q81BF7_BACCR 2qgm PF05139 152 - 445 844.9 2.9 291 96.6 60 0.5 0.22 download
Q7UAV7 RSMJ_SHIFL 2oyr PF04445 1 - 250 893.0 3.6 227 96.5 60 0.6 0.47 download
O29535 CBID_ARCFU 1sr8 PF01888 1 - 298 1042.6 3.5 260 99.2 130 0.56 0.38 download
P28012 CFI1_MEDSA 1eyp PF02431 1 - 222 769.7 3.5 195 83.6 50 0.5 0.32 download
P23951 CHI2_HORVU 1cns PF00182 24 - 266 820.0 3.4 234 87.2 50 0.68 0.31 download
Q07343 PDE4B_HUMAN 1f0j PF00233 324 - 700 1223.2 3.2 319 97.2 140 0.55 0.48 download
P21856 GDIA_BOVIN 1d5t PF00996 1 - 431 1377.5 3.2 369 91.6 70 0.66 0.24 download
A1B060 A1B060_PARDP 2p4x PF07542 1 - 236 738.6 3.1 227 100.0 40 0.88 0.34 download
P00260 HIP_ALLVD 1b0y PF01355 38 - 122 259.9 3.1 77 92.2 20 0.45 0.23 download
P96719 YWQG_BACSU 1pv5 PF09234 1 - 261 780.9 3.0 246 98.0 110 0.48 0.38 download
P12333 CB2A_SPIOL 1rwt PF00504 36 - 267 667.9 2.9 195 95.9 30 0.53 0.24 download
P16254 SRP14_MOUSE 1914 PF02290 1 - 110 313.8 2.9 105 100.0 20 0.35 0.35 download
A5Z9E1 A5Z9E1_9FIRM 3g74 PF12164 1 - 97 270.6 2.8 90 98.9 80 0.3 0.29 download
Q57142 C554_NITEU 1bvb PF13435 25 - 235 585.5 2.8 161 97.5 70 0.13 0.18 download
Q5V3A0 Q5V3A0_HALMA 2ijq PF03745 2 - 160 431.2 2.7 117 97.4 20 0.45 0.4 download
Q5KVS1 Q5KVS1_GEOKA 1u84 PF08958 1 - 87 232.3 2.7 73 100.0 30 0.5 0.44 download
P45774 GSPH_VIBCH 2qv8 PF12019 36 - 194 382.1 2.4 148 82.4 80 0.3 0.3 download
Q82US3 Q82US3_NITEU 2ich PF07143 23 - 356 759.1 2.3 325 96.3 130 0.56 0.3 download
P44654 NAPB_HAEIN 1jni PF03892 28 - 150 273.3 2.2 105 100.0 90 0.12 0.21 download
Q64V53 Q64V53_BACFR 2ra8 PF05406 1 - 354 764.8 2.2 248 97.2 50 0.4 0.22 download
Q8FIC7 Q8FIC7_ECOL6 3bqw PF03864 1 - 351 716.7 2.0 342 96.8 160 0.38 0.34 download
P79073 HYP2_HYPJE 1r2m PF06766 16 - 86 145.1 2.0 64 100.0 20 0.5 0.27 download
P50586 TUB_MOUSE 1c8z PF01167 243 - 505 531.7 2.0 253 96.8 260 0.13 0.26 download
Q2W5N3 Q2W5N3_MAGSA 3bhw PF08849 2 - 199 388.2 2.0 179 100.0 140 0.16 0.23 download
O34968 YERB_BACSU 2psb PF11258 21 - 331 609.1 2.0 295 98.3 240 0.49 0.42 download
P25746 HFLD_ECOLI 1qz4 PF04356 2 - 213 416.3 2.0 202 98.5 40 0.6 0.51 download
P01542 CRAM_CRAAB 1ab1 PF00321 1 - 46 84.5 1.8 44 100.0 40 0.25 0.24 download
P47123 MOG1_YEAST 1eq6 PF04603 30 - 218 305.5 1.6 184 92.4 140 0.19 0.25 download
P04963 PRXC_CALFU 1cpo PF01328 22 - 319 473.5 1.6 228 90.8 30 0.8 0.28 download
P34209 YDCF_ECOLI 3ca8 PF02698 1 - 266 404.6 1.5 243 83.5 20 0.85 0.3 download
O31858 YOJF_BACSU 1njh PF08830 1 - 116 162.4 1.4 114 100.0 20 0.65 0.24 download
Q72D34 Q72D34_DESVH 2o34 PF02424 2 - 249 347.0 1.4 212 98.6 20 0.55 0.27 download
F9UQB2 F9UQB2_LACPL 2iay PF08866 1 - 113 155.6 1.4 111 100.0 20 0.4 0.25 download
Q9P9H1 PRIS_PYRFU 1g71 PF01896 1 - 347 476.0 1.4 330 98.5 160 0.18 0.23 download
Q9HII6 Q9HII6_THEAC 1rlh PF04008 1 - 153 204.0 1.3 151 100.0 30 0.43 0.33 download
O28835 O28835_ARCFU 1y8a PF12710 1 - 308 371.9 1.2 237 94.5 30 0.13 0.22 download
Q5M594 Q5M594_STRT2 2qzi PF08860 1 - 100 119.4 1.2 97 100.0 30 0.27 0.24 download
P75455 Y330_MYCPN 1td6 PF11428 1 - 294 328.6 1.1 241 92.9 30 0.47 0.23 download
Q7D182 Q7D182_AGRT5 2o8s PF06748 1 - 211 221.6 1.1 189 100.0 40 0.47 0.24 download
P31412 VATC_YEAST 1u7l PF03223 1 - 392 377.6 1.0 383 96.3 20 0.4 0.21 download
P56680 GUN1_HUMIN 1a39 PF00840 2 - 402 379.0 1.0 396 98.2 80 0.72 0.38 download
P33665 CHIS_STRSN 1chk PF01374 41 - 278 198.5 0.8 226 99.1 20 0.25 0.17 download
P07845 ACTP2_STOHE 1gwy PF06369 1 - 175 141.8 0.8 153 98.0 130 0.15 0.22 download
Q9K0T5 Q9K0T5_NEIMB 2gkp PF07262 1 - 164 129.7 0.8 155 98.7 30 0.3 0.25 download
P04418 END5_BPT4 1eni PF03013 1 - 138 72.6 0.5 129 98.4 40 0.07 0.23 download
Q54450 HASA_SERMA 1b2v PF06438 1 - 188 74.3 0.4 181 96.7 70 0.06 0.22 download
P03695 VHED_BPT4 1gpc PF08804 22 - 239 70.5 0.3 211 99.1 140 0.07 0.18 download
A1S8W8 A1S8W8_SHEAM 2pv4 PF11269 1 - 144 45.5 0.3 142 95.8 20 0 0.23 download
P0A077 HLGB_STAAU 1lkf PF07968 27 - 325 69.7 0.2 286 97.9 330 0.12 0.14 download
P23024 TCPA_VIBCL 1oqv PF05946 54 - 224 39.5 0.2 170 98.2 20 0.05 0.22 download
Q5SI52 Q5SI52_THET8 1wn9 PF11432 1 - 131 20.0 0.2 125 100.0 30 0.03 0.2 download
P77335 HLYE_ECOLI 1qoy PF06109 1 - 303 41.0 0.1 287 100.0 20 0 0.21 download
A9CI22 A9CI22_AGRT5 2hly PF09641 1 - 202 28.8 0.1 201 100.0 30 0.03 0.23 download
Q7A189 SSPC_STAAW 1nyc PF09023 1 - 109 12.0 0.1 103 99.0 60 0.03 0.2 download
O59278 O59278_PYRHO 2hq4 PF09638 1 - 152 16.0 0.1 150 100.0 20 0.1 0.21 download
Q9HVP2 Q9HVP2_PSEAE 1y0k PF08682 1 - 209 20.6 0.1 209 100.0 30 0 0.2 download
Q47106 Q47106_ECOLX 1hq0 PF05785 720 - 1014 30.0 0.1 282 94.7 700 0.05 0.21 download
Q8B0H2 MATRX_VSIVC 1lg7 PF06326 48 - 229 16.0 0.1 175 100.0 110 0.02 0.23 download
Q9HIT9 Q9HIT9_THEAC 1nig PF09155 1 - 152 9.0 0.1 148 100.0 30 0.1 0.24 download
Q8IEU2 Q8IEU2_PLAF7 1n81 PF09216 21 - 206 8.0 0.0 166 99.4 30 0.03 0.23 download
O28187 Y2093_ARCFU 2ph7 PF05339 1 - 245 9.0 0.0 225 94.2 50 0.04 0.23 download
Q25063 Q25063_HALFU 1gak PF01303 18 - 158 5.0 0.0 131 97.7 20 0.1 0.23 download
P81453 TGAS_STRMB 1iu4 PF09017 77 - 407 9.1 0.0 330 100.0 80 0.01 0.16 download
P03390 ENV_MLVF5 1aol PF00429 43 - 270 1.0 0.0 228 100.0 230 0.05 0.17 download
P21327 INPP_BOVIN 1inp PF00459 1 - 400 1.0 0.0 400 100.0 70 0.04 0.13 download
P34948 MPI_CANAL 1pmi PF01238 2 - 441 1.0 0.0 440 100.0 110 0.05 0.16 download
Q8NBK3 SUMF1_HUMAN 1y1e PF03781 73 - 374 1.0 0.0 302 100.0 50 0 0.13 download